For comparison, corresponding statistics for other organisms annotated by the NCBI eukaryotic annotation pipeline were added to the graph.Query: annotated proteins The target coverage is the percentage of the target length that is included in the alignment.īelow is a cumulative graph displaying the number of genes with alignments above a given query or target coverage threshold. The query coverage is the percentage of the annotated protein length that is included in the alignment. Out of 20042 coding genes, 11960 genes had a protein with an alignment covering 50% or more of the query and 2896 had an alignment covering 95% or more of the query.ĭefinition of query and target coverage. Transcripts per gene, exons per transcriptĪlignment of the annotated proteins to a set of high-quality proteinsThe final set of annotated proteins was searched with BLASTP against the UniProtKB/Swiss-Prot curated proteins, using the annotated proteins as the query and the high-quality proteins as the target. Gene and feature statisticsCounts and length of annotated features are provided below for each assembly. Type of evidence retrieved from public databases and used for geneįor more information on the annotation process, please visit the NCBI EukaryoticĪnnotation Release informationThis annotation should be referred to as NCBI Hydra vulgaris Annotation Release 102ĭate of Entrez queries for transcripts and proteins: Jun 3 2015ĭate of submission of annotation to the public databases: Jun 8 2015ĪssembliesThe following assemblies were included in this annotation run: Assembly nameĢ assembled chromosomes unplaced scaffolds Transcript and protein alignments: The number and.Masking of genomic sequence: How much of.Alignment of the annotated proteins to a set of high-quality proteins: The number of annotated proteins with hits to a set of high-quality proteins.Gene and feature statistics: The counts andĬharacteristics of the annotated features. Assemblies: A brief description of the annotated.Release, important dates, the software version Annotation Release information: The name of the.The annotation products are available in the sequence databases and on the FTP site. Presents statistics on the annotation products, the input data used in the pipeline and Genome Annotation Pipeline, an automated pipeline that annotates genes, transcripts and proteins on draft and finished genome assemblies. The RefSeq genome records for Hydra vulgaris were annotated by the NCBI Eukaryotic NCBI Hydra vulgaris Annotation Release 102
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